Test Code LABKITVS KIT Asp816Val Mutation Analysis, Varies
Additional Codes
Test Name in EPIC EPIC Test Code |
Test Code | Mnemonic |
Mayo Test ID |
KIT ASP816VAL MUTATION ANALYSIS, VARIES |
LABKIVS | KITVS | KITVS |
Specimen Required
Submit only 1 of the following specimens:
Specimen Type: Whole blood
Container/Tube: Lavender top (EDTA) or yellow top (ACD)
Specimen Volume: 3 mL
Collections Instructions:
1. Invert several times to mix blood.
2. Send specimen in original tube. Do not aliquot.
3. Label specimen as blood.
Specimen Stability Information: Ambient (preferred) 7 days/Refrigerate 7 days
Specimen Type: Bone marrow
Container/Tube: Lavender top (EDTA) or yellow top (ACD)
Specimen Volume: 2 mL
Collections Instructions:
1. Invert several times to mix bone marrow.
2. Send specimens in original tube. Do not aliquot.
3. Label specimen as bone marrow.
Specimen Stability Information: Ambient (preferred) 7 days/Refrigerate 7 days
Specimen Type: Extracted DNA from blood or bone marrow
Container/Tube: 1.5- to 2-mL tube
Specimen Volume: Entire specimen
Collection Instructions:
1. Label specimen as extracted DNA from blood or bone marrow.
2. Provide indication of volume and concentration of DNA.
Specimen Stability Information: Frozen (preferred)/Refrigerated/Ambient
Forms
1. Hematopathology Patient Information (T676)
2. If not ordering electronically, complete, print, and send a Hematopathology/Cytogenetics Test Request (T726)) with the specimen.
Useful For
Diagnosing systemic mastocytosis using blood or bone marrow specimens
Special Instructions
Method Name
Allele-Specific Oligonucleotide Polymerase Chain Reaction (PCR)
Reporting Name
KIT Asp816Val Mutation Analysis, VSpecimen Type
VariesSpecimen Minimum Volume
Blood, Bone Marrow: 1 mL
Extracted DNA: 50 mcL at 20 ng/mcL concentration
Specimen Stability Information
Specimen Type | Temperature | Time | Special Container |
---|---|---|---|
Varies | Varies |
Reject Due To
Gross hemolysis | Reject |
Moderately to severely clotted Bone marrow biopsies Paraffin-embedded bone marrow clots Paraffin-embedded tissue Slides Paraffin shavings |
Reject |
Clinical Information
Systemic mastocytosis is a hematopoietic neoplasm that can be included in the general category of chronic myeloproliferative disorders (CMPD). These neoplasms are characterized by excessive proliferation of one or more myeloid lineages, with cells filling the bone marrow and populating other hematopoietic sites. In systemic mastocytosis, mast cell proliferation is the defining feature, although other myeloid lineages and B cells are frequently part of the neoplastic clone.
Function-altering point alterations in KIT, a gene coding for a membrane receptor tyrosine kinase, have been found in myeloid lineage cells in the majority of systemic mastocytosis cases. The most common KIT alteration is an adenine to thymine base substitution (A>T) at nucleotide position 2447, which results in an aspartic acid to valine change in the protein (Asp816Val). Much less frequently, other alterations at this same location are found, and occasional cases with alterations at other locations have also been reported. Variations at codon 816 are believed to alter the protein such that it is in a constitutively activated state. The main downstream effect of KIT activation is cell proliferation.
Detection of a variant at codon 816 is included as one of the minor diagnostic criteria for systemic mastocytosis in the World Health Organization classification system for hematopoietic neoplasms and is also of therapeutic relevance, as it confers resistance to imatinib, a drug commonly used to treat CMPD. It is now clear that individual mast cell neoplasms are variable with respect to the number of cell lineages containing the variant; some having positivity only in mast cells and others having positivity in additional myeloid and even lymphoid lineages. The alteration has not been reported in normal tissues.
Reference Values
An interpretive report will be provided indicating the mutation status as positive or negative.
Interpretation
The test will be interpreted as positive or negative for KIT Asp816Val.
Cautions
Some systemic mastocytosis cases may have the variation only in mast cells. Since these cells rarely circulate in blood and are difficult to obtain in significant numbers from bone marrow aspirate specimens, false-negative results may occur if neoplastic cells are present below the sensitivity of the assay (fewer than 0.1% altered alleles).
The test is qualitative only. Reliable quantitative results cannot be issued.
Supportive Data
The analytic sensitivity of this test is 0.1% and was determined by the dilution of a cell line containing homozygous KIT alteration. This means that 0.1% or greater of the KIT alleles present in the specimen must contain the alteration to be detected by the assay. The analytic specificity was 100% in assay validation.
Method Description
This assay detects the KIT alteration responsible for Asp816Val. The technique used is allele-specific oligonucleotide polymerase chain reaction (ASO-PCR) with fragment analysis on a genetic analyzer. DNA is extracted from bone marrow or blood, and PCR is used to amplify across the alteration site in 2 separate tubes; one contains a reverse primer complementary to the unaltered sequence and the other contains a reverse primer complementary to the altered sequence. Each of these is labeled with a fluorescent tag and contains an identical, non-labeled forward primer. Both primer sets amplify a 200 base pair fragment that differs only at the alteration site. The unaltered fragment should be amplified in all samples. Samples negative for KIT Asp816Val will not have an amplified fragment in the altered sequence reaction tube. Positive samples will have amplified fragments in both tubes. The test gives a qualitative (positive or negative) result only, as the end point PCR used is not reliable for quantification.(Unpublished Mayo method)
Specimen Retention Time
Whole blood, bone marrow: 2 weeks; Extracted DNA: 3 MonthsPerforming Laboratory
Mayo Clinic Laboratories in RochesterTest Classification
This test was developed and its performance characteristics determined by Mayo Clinic in a manner consistent with CLIA requirements. It has not been cleared or approved by the US Food and Drug Administration.CPT Code Information
81273
LOINC Code Information
Test ID | Test Order Name | Order LOINC Value |
---|---|---|
KITVS | KIT Asp816Val Mutation Analysis, V | 55201-8 |
Result ID | Test Result Name | Result LOINC Value |
---|---|---|
MP055 | Specimen Type | 31208-2 |
607982 | Interpretation | 69047-9 |
607983 | Signing Pathologist | 19139-5 |
Day(s) Performed
Monday through Friday